rs6378884 SNP Detail

Summary

• ID
  rs6378884
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137046994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATCTCCT CTCTGCTGAC
  CTCCCAAAGG GAGTGCGTGT ATTTCCTCTA GTTCTTTATC AGAATCCCCA AAATAAGTAG
  GAATGGGCAG CGTCTGCTCA CAGTCAGTAC ACCTTTCCCA TTTGCTAATA CGGCCTGGCC
  AGGCTGAGAG GAATCCTTCC CTGCCTTACC CTGGACAGTG AAGCCACTGA GACCATCGGT
  R
  GGCACCATGC GGCTGCTTCA AGCGACTGTT CTTTTCTTCC TTTTGTCCAA CAGTCTCTGC
  CACAGTGAGG ACGGCAAAGG TACGGTCCTC TTATCTTTTC TGATGGTGTG GGTGAGCTGC
  TAGGCTCAGT TGATCCTCGG GGGCTTCTCT GATGAGTTGC TGCTTGATTG GCTGAACAGG
  GTACACAGAG TTAAGTTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8785035	WI_WGS_3_137837218	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6378884					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137046994 () rs orientation: forward

Symbol	Name	Function Class
Emcn	endomucin	mRNA-UTR
Rr585936	regulatory region 585936	80 bp distal
Tssr31897	transcription start site region 31897	187 bp downstream
Tssr31898	transcription start site region 31898	138 bp downstream
Tssr31899	transcription start site region 31899	87 bp downstream
Tssr31900	transcription start site region 31900	79 bp downstream
Tssr31901	transcription start site region 31901	43 bp downstream
Tssr31902	transcription start site region 31902	10 bp downstream