rs6379175 SNP Detail

Summary

• ID
  rs6379175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105114189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCGCTGGA AAAGCTGAGA GTTCTACATC TTCATCCAAA
  GGAAGCCAGG AGCAGACTGT CTCACAGACA GCTAGAAGGG TCCAAAATCC ACCTACAAAG
  Y
  GACACACTTC CTCCAACAAG GCCACACCTA CTTCAACAAG GCCACACCTC CTAATAGTGC
  CACTCCCTAG GCCAAGCATA TTTAAACTAC CTTACTGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss8785326	WI_WGS_4_102974782	WI	MOUSE	f	SNP	T	C
ss321243320	CHEV_4_104929597	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs6379175					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105114189 () rs orientation: forward

Symbol	Name	Function Class
Rr596568	regulatory region 596568	1342 bp distal
Rr596569	regulatory region 596569	within coordinates
Rr596570	regulatory region 596570	1031 bp proximal
Tssr38159	transcription start site region 38159	107 bp upstream
Tssr38160	transcription start site region 38160	1545 bp upstream
Tssr38161	transcription start site region 38161	1622 bp upstream