rs6379209 SNP Detail

Summary

• ID
  rs6379209
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:34587065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACAAGGGTTA
  GCAAGGTTCA GGTTGGAAAC ACAGGGGATG ACAATCATGC ACCTCCAACT ACATTAGCTT
  ACTCCTTCCC ATAGAATGGG CCTCTGAGAA GATCAGTATT AGTTCTGAGT GTGGTTGACC
  AGAAAACTGA CATGTGTAGA ACATTAATGG CAAGCCTGAA CAAGAGACTT TGATGTGTTT
  TCTGTTTGGC TGAATATAGA GCTACCAATC AAAGCAGGTT CTAGCTGGAC CCTCTAGATT
  W
  TGCTGGCCAA GGGTCTATAN CACTGCATTC TGTGATACCA GAGGTAGCTT GAGCTGTTCT
  TCCCCAGGAA TGTTAGATAT TGAAGAATGG GGTAAATAAA GGACCTGGGA AGGCACCTGG
  CCCCTTCTGG ATAAGAACCT CCTGTAAAGT CTCATGAAAA GCTCTTGTTC TAGGTACAGC
  TTTGCCTGTT TTGGTCTTTT AGTGTCTAGA CAGTAAATGT TCCTATGTCT AAATTTCNNA
  TAACCCAGGT                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J
ss8785360	WI_WGS_19_34224666	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J
rs6379209					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34587065 () rs orientation: forward

Symbol	Name	Function Class
Ifit3b	interferon-induced protein with tetratricopeptide repeats 3B	Intron
Rr405932	regulatory region 405932	1852 bp downstream
Rr546756	regulatory region 546756	1685 bp distal
Rr546757	regulatory region 546757	1419 bp distal
Rr546758	regulatory region 546758	908 bp proximal
Tssr156137	transcription start site region 156137	1729 bp downstream