rs6379404 SNP Detail

Summary

• ID
  rs6379404
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40288270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCTCTG TTCCTGATGG
  AGCAAGCTGG GGTAGCCAGC AGGCTCTGAG CTCCCAAGCA GTTAGTTCTG AGCACAGAGA
  ACTCACAGTT CTCTTCCCCT ACCGGGGACA TTGCCCACAT GACCAGGGCA TGTGGTGAGC
  AGCTCTGAGT GGCAAAGCAG GCTTTCAGTC ACCTGAAGTC AGGAATCCTG TCAAGGTGGC
  M
  CCAGCAGCCT GTCCTGACTT ACGACTTAGG CAACTCATCC TCACCAACCC AAGCAGCCAA
  CAGACCTAGG CACTCCAGGA GCAACACTAA GTGAGAGGGG GAAGAATGTG GACTCTGAAG
  CTTAAGTGAG GGAATGCCTG TAACGCCCCA AATCAACTCT GGTTGGAGGT TCTCACAGCA
  ACCGCTTCTC TGGCTGTACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8785555	WI_WGS_9_40572512	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6379404					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40288270 () rs orientation: forward

Symbol	Name	Function Class
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676805	regulatory region 676805	564 bp distal
Rr676806	regulatory region 676806	696 bp distal
Rr676807	regulatory region 676807	645 bp distal
Rr676808	regulatory region 676808	138 bp distal
Tssr88904	transcription start site region 88904	835 bp upstream
Tssr88905	transcription start site region 88905	711 bp upstream
Tssr88906	transcription start site region 88906	616 bp upstream
Tssr88907	transcription start site region 88907	559 bp upstream
Tssr88908	transcription start site region 88908	530 bp upstream
Tssr88909	transcription start site region 88909	127 bp upstream