rs6379406 SNP Detail

Summary

• ID
  rs6379406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40288274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGTTCC TGATGGAGCA
  AGCTGGGGTA GCCAGCAGGC TCTGAGCTCC CAAGCAGTTA GTTCTGAGCA CAGAGAACTC
  ACAGTTCTCT TCCCCTACCG GGGACATTGC CCACATGACC AGGGCATGTG GTGAGCAGCT
  CTGAGTGGCA AAGCAGGCTT TCAGTCACCT GAAGTCAGGA ATCCTGTCAA GGTGGCCCCA
  R
  CAGCCTGTCC TGACTTACGA CTTAGGCAAC TCATCCTCAC CAACCCAAGC AGCCAACAGA
  CCTAGGCACT CCAGGAGCAA CACTAAGTGA GAGGGGGAAG AATGTGGACT CTGAAGCTTA
  AGTGAGGGAA TGCCTGTAAC GCCCCAAATC AACTCTGGTT GGAGGTTCTC ACAGCAACCG
  CTTCTCTGGC TGTACCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8785557	WI_WGS_9_40572516	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6379406					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40288274 () rs orientation: forward

Symbol	Name	Function Class
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676805	regulatory region 676805	568 bp distal
Rr676806	regulatory region 676806	700 bp distal
Rr676807	regulatory region 676807	649 bp distal
Rr676808	regulatory region 676808	142 bp distal
Tssr88904	transcription start site region 88904	839 bp upstream
Tssr88905	transcription start site region 88905	715 bp upstream
Tssr88906	transcription start site region 88906	620 bp upstream
Tssr88907	transcription start site region 88907	563 bp upstream
Tssr88908	transcription start site region 88908	534 bp upstream
Tssr88909	transcription start site region 88909	131 bp upstream