rs6379422 SNP Detail

Summary

• ID
  rs6379422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40288287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGCAAGC TGGGGTAGCC
  AGCAGGCTCT GAGCTCCCAA GCAGTTAGTT CTGAGCACAG AGAACTCACA GTTCTCTTCC
  CCTACCGGGG ACATTGCCCA CATGACCAGG GCATGTGGTG AGCAGCTCTG AGTGGCAAAG
  CAGGCTTTCA GTCACCTGAA GTCAGGAATC CTGTCAAGGT GGCCCCAGCA GCCTGTCCTG
  R
  CTTACGACTT AGGCAACTCA TCCTCACCAA CCCAAGCAGC CAACAGACCT AGGCACTCCA
  GGAGCAACAC TAAGTGAGAG GGGGAAGAAT GTGGACTCTG AAGCTTAAGT GAGGGAATGC
  CTGTAACGCC CCAAATCAAC TCTGGTTGGA GGTTCTCACA GCAACCGCTT CTCTGGCTGT
  ACCTCTCGGA CCTTCCTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8785573	WI_WGS_9_40572529	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6379422					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40288287 () rs orientation: forward

Symbol	Name	Function Class
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676805	regulatory region 676805	581 bp distal
Rr676806	regulatory region 676806	713 bp distal
Rr676807	regulatory region 676807	662 bp distal
Rr676808	regulatory region 676808	155 bp distal
Tssr88904	transcription start site region 88904	852 bp upstream
Tssr88905	transcription start site region 88905	728 bp upstream
Tssr88906	transcription start site region 88906	633 bp upstream
Tssr88907	transcription start site region 88907	576 bp upstream
Tssr88908	transcription start site region 88908	547 bp upstream
Tssr88909	transcription start site region 88909	144 bp upstream