rs6379466 SNP Detail

Summary

• ID
  rs6379466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101127441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAGGTTT TGTGTTTTCA
  CTTTTGAAAG ATATAAGGCA CAAGTCTTGA TGAAATTGTG AGTTTAGACA CAACTTTGTG
  ATTTTTCTTA AAGATTTATT TTAATTATGT GTATATATGT ATGTGTTTAT GCACATCAGT
  GCAGTACCCA CAAAGGCCAG AAGAGGGCAT CAGATCCCCA CTGGAGCCAC AGGTTCAGGT
  R
  GTTGTGACCT GCCTGACTCA GGTGTTGGGA ACTGAACTCA GATCCTCTGT AAGAGTTGTG
  TCTAGTCATA ACTGCTGAGC CATCTCTCCA ACTCCATAGA CACAAACCTG AATGAGCAGG
  GATCTGTACA ATCATGTGAC GTCCTCCTAT CACGTGATAA ACCAGAAACT TGCCAAGCTT
  TCTCTCTGCT GAACCAATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8785617	WI_WGS_3_101331382	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6379466					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101127441 () rs orientation: forward

Symbol	Name	Function Class
Gm65590	predicted gene, 65590	within coordinates
Rr581978	regulatory region 581978	27 bp distal