rs6379983 SNP Detail

Summary

• ID
  rs6379983
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:40288375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACATTGCC CACATGACCA
  GGGCATGTGG TGAGCAGCTC TGAGTGGCAA AGCAGGCTTT CAGTCACCTG AAGTCAGGAA
  TCCTGTCAAG GTGGCCCCAG CAGCCTGTCC TGACTTACGA CTTAGGCAAC TCATCCTCAC
  CAACCCAAGC AGCCAACAGA CCTAGGCACT CCAGGAGCAA CACTAAGTGA GAGGGGGAAG
  R
  ATGTGGACTC TGAAGCTTAA GTGAGGGAAT GCCTGTAACG CCCCAAATCA ACTCTGGTTG
  GAGGTTCTCA CAGCAACCGC TTCTCTGGCT GTACCTCTCG GACCTTCCTG GCCTTCCCCC
  TATTATCCAT TATCTGGGTC AGTAATGTGA ATGGGTGGAA GAGAACAAAG AGGAGATTAA
  TTATGAAATA GCAACCTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8786136	WI_WGS_9_40572617	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6379983					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40288375 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gramd1b	GRAM domain containing 1B			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr676805	regulatory region 676805			669 bp distal
Rr676806	regulatory region 676806			801 bp distal
Rr676807	regulatory region 676807			750 bp distal
Rr676808	regulatory region 676808			243 bp distal
Tssr88904	transcription start site region 88904			940 bp upstream
Tssr88905	transcription start site region 88905			816 bp upstream
Tssr88906	transcription start site region 88906			721 bp upstream
Tssr88907	transcription start site region 88907			664 bp upstream
Tssr88908	transcription start site region 88908			635 bp upstream
Tssr88909	transcription start site region 88909			232 bp upstream