rs6379984 SNP Detail

Summary

• ID
  rs6379984
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101127507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTCACTTTTG
  AAAGATATAA GGCACAAGTC TTGATGAAAT TGTGAGTTTA GACACAACTT TGTGATTTTT
  CTTAAAGAtt tattttaatt atgtgtatat atgtatgtgt ttatgcacat cagtgcagta
  cccacaaagg ccagaagagg gcatcagatc cccactggag ccacaggttc aggtngttgt
  gacctgcctg actcnggtgt tgggaactga actcagatcc tctntaagag ttgtgtctag
  W
  cataactgct gagccatctc tccaactccA TAGACACAAA CCTNAATGAG CAGGGATCTG
  TACAATCATG TGACGTCCTC CTATCACGTG ATAAACCAGA AACTTGCCAA GCTTTCTCTC
  TGCTGAACCA ATTCTTAGAC CGAGAAGTTG TCCTGGGTCT TCATCGGCCA TTACCAGCTT
  TTGTTCTTGT CTGAGAGGGT AGGCAGAGCT CTTAGCCCCG TGACTCTTCA AAAGGACTTC
  CCAAGACATG                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8786137	WI_WGS_3_101331448	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6379984					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101127507 () rs orientation: forward

Symbol	Name	Function Class
Gm65590	predicted gene, 65590	within coordinates
Rr581978	regulatory region 581978	93 bp distal