rs6380037 SNP Detail

Summary

• ID
  rs6380037
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102490725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAACCTA CATGTGACCT
  CAAAAGCAAG TATGAGGGTC TTCTCGGGAC TGTATACTCG AGTCCTTGGT TCTGGCATTT
  TCTGGGGGCA TGTTTAATAG AAATCAAACT CCGCCAACTT TCGGTGAGGT GGTGGGTGGT
  GAGTGGAAAG ATGGTGTTTA AAGCCAGACA TCGAGATTCC AACCTCAGAC AAAGAAAATA
  Y
  GTCTAAATCT GCCCATCTTC ATCCAAGAGA AAGAACCTAT TCATCTATTT CTCTCATCCC
  ACGAATCTTT CCAAACATGC CTCGCATCTT GTCTGACATA AAATTTCTTC ACATTGCTTA
  TTTACCAGTG TGGACCTTTG GAGTGGTTAC TTATCAGAAA AGGTGCTCTA CTTTGGTGCT
  TGTGTGCAAG GAAGGCAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8786190	WI_WGS_2_103482738	WI	MOUSE	f	SNP		C	T
ss45213326	mCV23733501	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss147119790	ENSMUSSNP5950065	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320439908	CHEV_2_102500537	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6380037					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102490725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	625 bp distal
Gm57687	predicted gene, 57687	within coordinates
Rr561713	regulatory region 561713	1711 bp distal
Rr561714	regulatory region 561714	1568 bp distal
Rr561715	regulatory region 561715	1089 bp distal
Rr561716	regulatory region 561716	304 bp distal
Rr561717	regulatory region 561717	1917 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19100	transcription start site region 19100	1800 bp downstream
Tssr19101	transcription start site region 19101	1711 bp downstream
Tssr19102	transcription start site region 19102	1685 bp downstream
Tssr19103	transcription start site region 19103	1638 bp downstream
Tssr19104	transcription start site region 19104	1616 bp downstream
Tssr19105	transcription start site region 19105	1546 bp downstream
Tssr19106	transcription start site region 19106	1528 bp downstream
Tssr19107	transcription start site region 19107	1508 bp downstream
Tssr19108	transcription start site region 19108	1472 bp downstream
Tssr19109	transcription start site region 19109	1430 bp downstream
Tssr19110	transcription start site region 19110	1148 bp downstream