rs6380287 SNP Detail

Summary

• ID
  rs6380287
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156268260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC AAAAGAACTT AAATTTACAT
  M
  TACCAACTCA AGTTAGCCTT TATAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8786440	WI_WGS_1_157559108	WI	MOUSE	f	SNP							C		A
ss45045269	mCV23089473	ABI	CRAMUS_MOUSE	f	SNP		A					C			A
ss60329448	NES15835620	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	C	A		A		A	A	A	A	C	C	A	C
ss145796639	ENSMUSSNP4489311	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6380287					SNP	C	A	A	A	C	A	C	A	A	A	A	A	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60329448	NES15835620	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156268260 () rs orientation: forward

Symbol	Name	Function Class
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	976 bp downstream
Tssr14442	transcription start site region 14442	1371 bp upstream
Tssr14443	transcription start site region 14443	692 bp downstream
Tssr14444	transcription start site region 14444	710 bp downstream