rs6380380 SNP Detail

Summary

• ID
  rs6380380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:100820749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGGAAAT GGAGGCAGGA
  GGTCAAGGTT AGCCAAAGAC ACATATGGGA CCCTGTCCAA AAACAAACAC CAAACCCAAA
  CGGGGCCACG TTGGGGGTCC TGGATAGGTA AAGGCAGAAC AAATAAGTTT GGCATTTGGA
  TGTTCTTCCA TACGCTGAAA CTGTACATAC TGACATCTAG ATTAGCTGGA ATTCAGTTGT
  R
  TCCCTCTTCC TACATCTTTC CAGGGTTGCA GGTCAGGCTC CTAGTCTTAA TGTTTCAGCA
  CTAAGTCTGT TTGTTTGGCT TTTATTTCAG AATATAAAGC CCAGACTGAC TTGCAACTTG
  AATCAGCCCT CCTGCCGTTG GATGTTAGAC TATAGATGTG AGCCACCATA TTTAGCTACC
  CTTGGATTTT GAAAATATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8786534	WI_WGS_5_98218521	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6380380					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100820749 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq2	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase			Intron
				Noncoding-Transcript-Variant
Cpgi16113	CpG island 16113			824 bp proximal
Gm15777	predicted gene 15777			within coordinates
Rr615537	regulatory region 615537			1168 bp distal
Rr615538	regulatory region 615538			1274 bp distal
Rr615539	regulatory region 615539			173 bp distal
Rr615540	regulatory region 615540			540 bp proximal
Rr615541	regulatory region 615541			1371 bp proximal
Rr615542	regulatory region 615542			1391 bp proximal
Tssr52113	transcription start site region 52113			1347 bp downstream