rs6380436 SNP Detail

Summary

• ID
  rs6380436
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156268340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTATCAA ACGAATCTGT
  CAAAGCAGAG GGAACATGAA TTTCCTACCT CTGTCTCCTA TAAGTAACTC CAGAGCTACA
  CAGGCTAATA GCATTCACAC AAAAGAACTT AAATTTACAT CTACCAACTC AAGTTAGCCT
  TTATAAAGTG GGGGAAAAAA CTTCCAGATA AAGACATGAC TATTACAGGT TTACTTTTTT
  W
  AAAAATGGGA AATTAAAAAT CTATTTAAAA GAACCAGGTG TGGTGGTGCA CCCCTTTAAT
  CCCAGAACTT GGGAGGCAGG GACAAATGGA TCTCTGTGAG TTCCAAGCCA GCCTGATTTA
  CAAGTCTTTA TAGTGAGTTC TAGGATAGCC AGACCTCTGT ACAGAGACCC TGTCTCAAAC
  AAAACAAAAC AAAACAAACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8786590	WI_WGS_1_157559188	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6380436					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156268340 () rs orientation: forward

Symbol	Name	Function Class
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	1056 bp downstream
Tssr14442	transcription start site region 14442	1451 bp upstream
Tssr14443	transcription start site region 14443	612 bp downstream
Tssr14444	transcription start site region 14444	630 bp downstream