rs6380488 SNP Detail

Summary

• ID
  rs6380488
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43858018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATAATGA TTAATATCTA
  AATCTTAACT GCTGGGACCA AGTCTATTCT TCCTGGACGT ATCTACTTGT ACTTTTACCT
  CCAAAGGGAC TGGAAGATTT AAATTCCTTT GTGGATTTTC TGGCAGTGGA GGGAAGTCTG
  ACCTTTTATG CCCTTTATTT CTTCCTTATG AGGTCTATAG GTTTTTAATG TCATCTTTTA
  W
  GAAACCATCT CCTTTGATCT TGGGCTATAG TTATCTCTTT TTTAGAACAG TTAAGTAAGC
  AAGAATCATT AACCTTAGTG AGTTCCTCCT GCAGAGTGCA CCAAGGGCAA CCGGAGGAAC
  CGGTTTCTGT GGTAGACTGC AAAGAGGCTT AATTTCCTTG TAGAATCTTT AGACAAATTA
  TCAAAGACGC TTCTAAAGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8786642	WI_WGS_18_43883823	WI	MOUSE	f	SNP			T		A
ss49295161	NES12688959	PERLEGEN	MM_PANEL2	f	SNP	T	T		A		A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6380488					SNP	T	T	T	A	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295161	NES12688959	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43858018 () rs orientation: forward

Symbol	Name	Function Class
Rr345822	regulatory region 345822	1983 bp proximal
Rr348914	regulatory region 348914	182 bp proximal
Rr393629	regulatory region 393629	within coordinates