rs6380668 SNP Detail

Summary

• ID
  rs6380668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102490870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATTTCTCT CATCCCACGA ATCTTTCCAA ACATGCCTCG
  CATCTTGTCT GACATAAAAT TTCTTCACAT TGCTTATTTA CCAGTGTGGA CCTTTGGAGT
  R
  GTTACTTATC AGAAAAGGTG CTCTACTTTG GTGCTTGTGT GCAAGGAAGG CAGTATCATG
  TGCTCAAACA TATCTCTAGA ATTACATATT AGGAGCCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8786822	WI_WGS_2_103482883	WI	MOUSE	f	SNP		G	A
ss45234600	mCV23733512	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss147119803	ENSMUSSNP6508093	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320439911	CHEV_2_102500682	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6380668					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102490870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	770 bp distal
Gm57687	predicted gene, 57687	within coordinates
Rr561713	regulatory region 561713	1856 bp distal
Rr561714	regulatory region 561714	1713 bp distal
Rr561715	regulatory region 561715	1234 bp distal
Rr561716	regulatory region 561716	449 bp distal
Rr561717	regulatory region 561717	1772 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19100	transcription start site region 19100	1945 bp downstream
Tssr19101	transcription start site region 19101	1856 bp downstream
Tssr19102	transcription start site region 19102	1830 bp downstream
Tssr19103	transcription start site region 19103	1783 bp downstream
Tssr19104	transcription start site region 19104	1761 bp downstream
Tssr19105	transcription start site region 19105	1691 bp downstream
Tssr19106	transcription start site region 19106	1673 bp downstream
Tssr19107	transcription start site region 19107	1653 bp downstream
Tssr19108	transcription start site region 19108	1617 bp downstream
Tssr19109	transcription start site region 19109	1575 bp downstream
Tssr19110	transcription start site region 19110	1293 bp downstream