rs6380804 SNP Detail

Summary

• ID
  rs6380804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:34587303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACCCTCTAGA
  TTNTGCTGGC CAAGGGTCTA TANCACTGCA TTCTGTGATA CCAGAGGTAG CTTGAGCTGT
  TCTTCCCCAG GAATGTTAGA TATTGAAGAA TGGGGTAAAT AAAGGACCTG GGAAGGCACC
  TGGCCCCTTC TGGATAAGAA CCTCCTGTAA AGTCTCATGA AAAGCTCTTG TTCTAGGTAC
  AGCTTTGCCT GTTTTGGTCT TTTAGTGTCT AGACAGTAAA TGTTCCTATG TCTAAATTTC
  Y
  NATAACCCAG GTTAACCAAA TTGTGCATTA TGTCTGTCTC TCtgtgttag ttacattgct
  taggatgcta ttataagaga cccgatgaaa gcaacttaag gaagaaaatg ttaatttatg
  tcagcttaga tgtttgaggt gacaattagg cagtgaatgc atggtggtaa cagcacatgc
  tgctctcact gtggttagtg aggaagcaga ggcaggnaga tactggngcc cagcttgctt
  tattttattt                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J
ss8786958	WI_WGS_19_34224904	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J
rs6380804					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34587303 () rs orientation: forward

Symbol	Name	Function Class
Ifit3b	interferon-induced protein with tetratricopeptide repeats 3B	Intron
Rr546756	regulatory region 546756	1923 bp distal
Rr546757	regulatory region 546757	1657 bp distal
Rr546758	regulatory region 546758	670 bp proximal
Tssr156137	transcription start site region 156137	1967 bp downstream