rs6380836 SNP Detail

Summary

• ID
  rs6380836
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9068054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGAGAAT TAGAGGCCAC
  TGGCAGGCCC GGATGGCAGC TGGGGGCGGG GAGTCACAGT GCAGGGCAGG GCAGAGGTGC
  CTTCTGCCAG ATAGCTGTGA CTGAATGAAT GAGTCATTTC CCCTACTGGG CAAGCGCTCC
  CCTGGCCGTC CCACAACTAC GGAGGATATC CCTGGATCAG GAAGGACCCT GAGGGGAAGA
  M
  AATAAAAATC AAAACAAAAC AGAAACTGGC ACGGGATACT GAAAGGACAC AGTTTACAAC
  AGCCTAGCTC TGCATTCTTG ACCACGTCCA CACGGCCATT CATCTCTGGT ACATTCCTTC
  ATCATTTCTA GAAAAATGGA CTTGGACCCT GGCACTAGAG GTGACCTTGG GTAGCCATAC
  AGCGACTTCC AGATCTTTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8786990	WI_WGS_11_9026976	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6380836					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9068054 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2578	CpG island 2578	298 bp proximal
Rr385585	regulatory region 385585	within coordinates
Rr442635	regulatory region 442635	1557 bp distal
Rr442636	regulatory region 442636	within coordinates
Rr442637	regulatory region 442637	464 bp proximal
Tssr3423	transcription start site region 3423	44 bp upstream
Tssr3424	transcription start site region 3424	80 bp upstream
Tssr100322	transcription start site region 100322	64 bp downstream
Tssr100323	transcription start site region 100323	37 bp downstream
Tssr100324	transcription start site region 100324	16 bp upstream
Tssr100325	transcription start site region 100325	482 bp upstream
Tssr100326	transcription start site region 100326	517 bp upstream
Tssr100327	transcription start site region 100327	565 bp upstream
Tssr100328	transcription start site region 100328	1169 bp upstream
Tssr100329	transcription start site region 100329	1225 bp upstream
Upp1	uridine phosphorylase 1	49 bp upstream