rs6381064 SNP Detail

Summary

• ID
  rs6381064
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102490894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGAGATTC CAACCTCAGA
  CAAAGAAAAT ACGTCTAAAT CTGCCCATCT TCATCCAAGA GAAAGAACCT ATTCATCTAT
  TTCTCTCATC CCACGAATCT TTCCAAACAT GCCTCGCATC TTGTCTGACA TAAAATTTCT
  TCACATTGCT TATTTACCAG TGTGGACCTT TGGAGTGGTT ACTTATCAGA AAAGGTGCTC
  Y
  ACTTTGGTGC TTGTGTGCAA GGAAGGCAGT ATCATGTGCT CAAACATATC TCTAGAATTA
  CATATTAGGA GCCCACATGA CTTAACATCA GCACACTTCT GTGTTTGGTT TTAAAGGCTT
  TCATCTTAGA ATGGGTATAA AGGTATTTCA GGCTATCTAC AGGACCCTTC CTGAATTATT
  TCTGCCTTTA GAGTCTCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8787220	WI_WGS_2_103482907	WI	MOUSE	f	SNP		T	C
ss45375370	mCV23733782	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss147119809	ENSMUSSNP3454524	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320439912	CHEV_2_102500706	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6381064					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102490894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	794 bp distal
Gm57687	predicted gene, 57687	within coordinates
Rr561713	regulatory region 561713	1880 bp distal
Rr561714	regulatory region 561714	1737 bp distal
Rr561715	regulatory region 561715	1258 bp distal
Rr561716	regulatory region 561716	473 bp distal
Rr561717	regulatory region 561717	1748 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19100	transcription start site region 19100	1969 bp downstream
Tssr19101	transcription start site region 19101	1880 bp downstream
Tssr19102	transcription start site region 19102	1854 bp downstream
Tssr19103	transcription start site region 19103	1807 bp downstream
Tssr19104	transcription start site region 19104	1785 bp downstream
Tssr19105	transcription start site region 19105	1715 bp downstream
Tssr19106	transcription start site region 19106	1697 bp downstream
Tssr19107	transcription start site region 19107	1677 bp downstream
Tssr19108	transcription start site region 19108	1641 bp downstream
Tssr19109	transcription start site region 19109	1599 bp downstream
Tssr19110	transcription start site region 19110	1317 bp downstream