rs6381075 SNP Detail

Summary

• ID
  rs6381075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101127714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGAGCCA TCTCTCCAAC
  TCCATAGACA CAAACCTGAA TGAGCAGGGA TCTGTACAAT CATGTGACGT CCTCCTATCA
  CGTGATAAAC CAGAAACTTG CCAAGCTTTC TCTCTGCTGA ACCAATTCTT AGACCGAGAA
  GTTGTCCTGG GTCTTCATCG GCCATTACCA GCTTTTGTTC TTGTCTGAGA GGGTAGGCAG
  R
  GCTCTTAGCC CCGTGACTCT TCAAAAGGAC TTCCCAAGAC ATGGCTCAGT CAGTGGAGAT
  AATAGCCACG GGAATGCATT GCACTTCCCA AGTCTGGACC CTGCAGCAGA TATGCAGGAA
  GGCAGGGATG AATGTCTGCA GCCAATACTT GATTGCCAGG CGTGGTCCTA AGGGAGGCAT
  AGCTGCAGTC AGTCCCTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss8787231	WI_WGS_3_101331655	WI	MOUSE	f	SNP	G	A
ss320851482	CHEV_3_101024321	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs6381075					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101127714 () rs orientation: forward

Symbol	Name	Function Class
Gm65590	predicted gene, 65590	within coordinates
Rr581978	regulatory region 581978	300 bp distal