rs6381338 SNP Detail

Summary

• ID
  rs6381338
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11320977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATCAAGT TTTAGTGGCA
  CTGTGCGATT TTTCTCCTGT GTTAAGTATT AATGTGCTCA CAAAGACAAA CTGGTTTATC
  AACCTACCCA CACAGATTTG TAACTAATCA CAAAAATAAA GTTTAAAAAA AATCTTTGTC
  AAATGATAAC ACATTGCAAA CACAGATATA GCTATAGCTA AAGAAAAAAG AGGAATTACA
  K
  TCTTCCTTAC CAGCAACCTG TTTTGAGGCT GGTTTTAGGT AGTATCTTAA ATGTGCATGA
  AATTTAACAC GAAGAGCTGC AGGAAGAGGA GGAATGGCTG AATCATGACC TCAGGGACAG
  GACATCTAGT CCCAGTCAGC ATGTACTTCT AATAGTCTTT TGAAAAATGG CTTTCCATTG
  AATTCTTCAA ACTCCCTTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8787494	WI_WGS_4_10805187	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6381338					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11320977 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14033	CpG island 14033	627 bp proximal
Dpy19l4	dpy-19 like 4	within coordinates
Gm26663	predicted gene, 26663	988 bp upstream
Rr588912	regulatory region 588912	498 bp proximal
Rr588913	regulatory region 588913	1150 bp proximal
Rr588914	regulatory region 588914	1161 bp proximal
Rr588915	regulatory region 588915	1280 bp proximal
Tssr36477	transcription start site region 36477	923 bp upstream
Tssr36478	transcription start site region 36478	953 bp upstream
Tssr36479	transcription start site region 36479	1253 bp upstream
Tssr40926	transcription start site region 40926	1099 bp downstream
Tssr40927	transcription start site region 40927	1132 bp downstream