rs6381443 SNP Detail

Summary

• ID
  rs6381443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:159222226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAACACGT GCGTTAAGTA
  CCTACAATGT GCCAAACATT TTGCTAAAGA TTTAGTGATG AATAAGCTGG ATATGGTGCC
  AACTTAAAAT TTGAAGCAAG CCTCAATGGA AGAGTACCCT GATATTCAGA CATAGTTAAT
  TTCAGTTATA AGCTTCACCT AAATCAGTAA TATTCATGTA AGATAGTAAT AGAACCAAAG
  Y
  GGAACTAATG AGAAGTAGTA GAGTAGATAA TGATGAGATT TAGTTTATAT CTCAAAAAAA
  AATCTTCCTA GATAATTCTT GATTTTGAGT AGCTGTTTCT TTTAAATATT ATAGATAGAA
  TCAAACTCAA GATCTTTATA AATTTTAATT CTTGTATTTT AAAATATTGA TCTGTCCTGG
  GCTAATAGCT AAGCTGGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8787599	WI_WGS_3_160134217	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6381443					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:159222226 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Depdc1a	DEP domain containing 1a			Intron
				Noncoding-Transcript-Variant
Rr588123	regulatory region 588123			1105 bp proximal
Rr588124	regulatory region 588124			1303 bp proximal