rs6382090 SNP Detail

Summary

• ID
  rs6382090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78239711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTCAGTG ATTATGCAGT
  GAAAGGAAGC AAAAGATACA AAGGTCCTGT AGAAGACATT ATGATCACTA CTATGACTAT
  CCAACTGGTG ATGAAGTTCT CCGAGTCATT TCATAGGATA TACATCCATT GACCTGGACC
  TCTGTTCTTC TTCTCCACAT TCCTCAATCT CCACTCCTTG TTTGTTCTCT CTCAGCCAAC
  Y
  CAGGAGGTAC AAATTTTTTC GGTCTATTTT AATAAACGTT CAGCCTCTCC CTTTGCCCAC
  CTCCTATCAG AGGTAGTAGA AGAGAAAAGT TATTAGGATA TGGGGCAAGT GGACCTTTTA
  GCAATAGTTC TTTGTGGGTG ATCTCATTAA TCTTTGTTAG CAGTTCAGTC CTGTAGCAAA
  CAGCAAATAA GAATCAACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8788246	WI_WGS_12_72870466	WI	MOUSE	f	SNP							T		C
ss47179470	NES11239089	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6382090					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47179470	NES11239089	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78239711 () rs orientation: forward

Symbol	Name	Function Class
Ccdc196	coiled-coil domain containing 196	1305 bp upstream
Gm59517	predicted gene, 59517	14 bp downstream
Tssr114034	transcription start site region 114034	1288 bp upstream