rs6382838 SNP Detail

Summary

• ID
  rs6382838
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:11321244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACGG TCGCATTCAC AACTCCACTC
  M
  GTAAGATAAA AACTGCTTTC CAGCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8788994	WI_WGS_4_10805454	WI	MOUSE	f	SNP				A	C
ss45644145	mCV23467956	ABI	CRAMUS_MOUSE	f	SNP	C	C	A			C
ss146013120	ENSMUSSNP3437597	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A			C
ss321043190	CHEV_4_11248391	CHEVERUD	SCREENING_POP	f	SNP							C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6382838					SNP	C	C	A	A	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11321244 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14033	CpG island 14033			360 bp proximal
Dpy19l4	dpy-19 like 4			Intron
				Noncoding-Transcript-Variant
Gm26663	predicted gene, 26663			721 bp upstream
Rr588912	regulatory region 588912			231 bp proximal
Rr588913	regulatory region 588913			883 bp proximal
Rr588914	regulatory region 588914			894 bp proximal
Rr588915	regulatory region 588915			1013 bp proximal
Tssr36477	transcription start site region 36477			656 bp upstream
Tssr36478	transcription start site region 36478			686 bp upstream
Tssr36479	transcription start site region 36479			986 bp upstream
Tssr40926	transcription start site region 40926			832 bp downstream
Tssr40927	transcription start site region 40927			865 bp downstream