rs6383956 SNP Detail

Summary

• ID
  rs6383956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:20188237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAGGGCC CGCCCCACCC
  TTGTCCCACC CCCTGTCGGC TACACCTCGC GAGACCGGGC AACGAGACTT CCCAGAAAGC
  CTTGGGCTAC ACTCAACCGC GGTTCGCCAG TCGCGCCTGG GCGGGACGGT GGGAGGGGCC
  TGCCTAGCGA TTTAGCGGCC TGGAAGGCCA CGCCCCAAGT CGGAAGTGAC GGAGCCGAGC
  Y
  AGCGCGACGA GGCCGCCTCT ATGGTCTTCC TCTCCTTCTG GAGTCGGGAA ATGGCCGCTG
  TGTAGTTAGC ACGGAGGTAA ACCCTGCACG CACATCGTGC TTCGGCGTGT CAGGTAGGCC
  TCGCGCCGCA TTCGAGTCAC TCAAAGGAGA AAGCCGAGGC GACAGGGCGG TTGGGTATCG
  ACAACTCTGA CGCGTGGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8790112	WI_WGS_10_20195477	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6383956					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:20188237 () rs orientation: forward

Symbol	Name	Function Class
4933406P04Rik	RIKEN cDNA 4933406P04 gene	within coordinates
Bclaf1	BCL2-associated transcription factor 1	within coordinates
Cpgi1349	CpG island 1349	within coordinates
D10Csu2	DNA segment, Chr 10, Central Connecticut State University 2	321 bp distal
Gm67769	predicted gene, 67769	within coordinates
Tssr92593	transcription start site region 92593	91 bp downstream
Tssr92594	transcription start site region 92594	within coordinates
Tssr92595	transcription start site region 92595	7 bp upstream
Tssr92596	transcription start site region 92596	33 bp upstream
Tssr92597	transcription start site region 92597	464 bp upstream
Tssr96944	transcription start site region 96944	213 bp upstream