rs6384469 SNP Detail

Summary

• ID
  rs6384469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:110648539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTG TCATCTACCC ACTTCACAAC
  R
  AGGTTCCCTG AAACAGCAGA GCCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8790625	WI_WGS_12_104949853	WI	MOUSE	f	SNP		G	A
ss138692560	ENSMUSSNP4047726	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6384469					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110648539 () rs orientation: forward

Symbol	Name	Function Class
1700001K19Rik	RIKEN cDNA 1700001K19 gene	Intron
Gm53768	predicted gene, 53768	659 bp upstream
Rr472964	regulatory region 472964	551 bp distal
Tssr117784	transcription start site region 117784	452 bp downstream
Tssr117785	transcription start site region 117785	501 bp downstream