rs6384921 SNP Detail

Summary

• ID
  rs6384921
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:131913181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGGCTGCCTG
  CTTCAGTGTT CCTACCACAA ACACAATTCT GTACAGTACC CAAGTtttct ttctttcttt
  ctttctttct ttctttcttt ctttctttct ttcttccctt cCCTTCCCTT CCTTCCttcc
  ttccttcctt ctttctttct ttctttctct ctctctcttt ttctctcttt ctttctctct
  ttctttcttt ctttctttct ctctctctct ttttctctct ttctttctct ctttctttct
  Y
  tctttctttc tttctttctt tctttctttc tttctttctt tctttctttc tttcCTTAAT
  GACACCCTCT GCTTTTGAGG ACCTGCCAGC CTTACTTTCC TCAGAAAGCT AAAATGCCTG
  AACTGAGATG AGTTCAAGAG ATGTAAAAGA GGTGTCAGGA GCCCGCGCCC CATCCAGGAG
  CTCCCTGCCC ACACCCATTC CCCTTTCAAG CTCAGAGAAG GGCTCAAGAT GTGACATTCA
  AAGGCCAGCT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
ss8791077	WI_WGS_7_122291454	WI	MOUSE	f	SNP			C	T
ss145936840	ENSMUSSNP2182870	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
rs6384921					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:131913181 () rs orientation: forward

Symbol	Name	Function Class
Chst15	carbohydrate sulfotransferase 15	within coordinates
Gm44891	predicted gene 44891	404 bp downstream
Gm71837	predicted gene, 71837	within coordinates
Rr656553	regulatory region 656553	940 bp proximal
Tssr75193	transcription start site region 75193	159 bp downstream