rs6385192 SNP Detail

Summary

• ID
  rs6385192
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99092074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCTGGGC ATGGATCTGA
  GTCAGTGGTA GAACTTACAG CAACTTGAGT CATCTTTTTT AATACAAGAA ATAAAGTCCA
  GTATGGGGTG AGGCTGGCAG GCTGGCGGTG GGAAGCTGTG CTGAAGATAT TGAAAGAGAC
  GTGGCTCTAT CTAGTCCATG GACTGTACTA ATTATGTCTC TTTGTCAGAT TTATATGTTG
  R
  AACCATAATC TTGAAGTGAT GGGATTTTAT AAAGTTAATT AGGTTGAGAG TGTGCCTATC
  AATGAATAGG ATTGGTGACC TTCTAAGACA GGAGTCTGGC TGGCCATCTT TTTCCTAGCG
  AGGATCCTAT AAGTCTACAA CTAAAAGGGA GTCCTCACTA GAGCTCAACT TTTTGCTGAG
  GCTTCCAGCC TCCCAAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8791348	WI_WGS_5_96474099	WI	MOUSE	f	SNP							G		A
ss61200721	NES16706813	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A		G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6385192					SNP	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61200721	NES16706813	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99092074 () rs orientation: forward

Symbol	Name	Function Class
Prkg2	protein kinase, cGMP-dependent, type II	within coordinates
Tssr52014	transcription start site region 52014	442 bp upstream
Tssr52015	transcription start site region 52015	410 bp upstream
Tssr52016	transcription start site region 52016	375 bp upstream
Tssr52017	transcription start site region 52017	324 bp upstream