rs6385577 SNP Detail

Summary

• ID
  rs6385577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:20188464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGTCGGAAGT
  GACGGAGCCG AGCNAGCGCG ACGAGGCCGC CTCTATGGTC TTCCTCTCCT TCTGGAGTCG
  GGAAATGGCC GCTGTGTAGT TAGCACGGAG GTAAACCCTG CACGCACATC GTGCTTCGGC
  GTGTCAGGTA GGCCTCGCGC CGCATTCGAG TCACTCAAAG GAGAAAGCCG AGGCGACAGG
  GCGGTTGGGT ATCGACAACT CTGACGCGTG GTGACGGGTC GGCGGCGGGA ACGGGGACCC
  Y
  GAGCCGTTAC TCGTGCGTTT TCCTCCTCGC TCCCTCGGGT CTGGAAGGCG CCGCGGGCCG
  CCGGGGTGGG GGGATGGGGG AGCTGCGCCA CCAGCGGGCC GGGCTGCGAA CCTGGCTCGG
  GGCCGGAGCC CGGGAGGCCT CGGCGTGCGC GTGCGCAAAC CGCTCGCCGA CCCTTCCCCC
  ACGGCCTCGG CTGGGACTCC TGCGCGCGCC CGGCCCAGGG CTCTGCGCAC GCGTGCTTTT
  TTNCCCTTTC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8791733	WI_WGS_10_20195704	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6385577					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:20188464 () rs orientation: forward

Symbol	Name	Function Class
4933406P04Rik	RIKEN cDNA 4933406P04 gene	within coordinates
Bclaf1	BCL2-associated transcription factor 1	within coordinates
Cpgi1349	CpG island 1349	within coordinates
D10Csu2	DNA segment, Chr 10, Central Connecticut State University 2	548 bp distal
Gm67769	predicted gene, 67769	within coordinates
Rr428529	regulatory region 428529	1740 bp distal
Rr428530	regulatory region 428530	171 bp distal
Rr428531	regulatory region 428531	686 bp distal
Rr428532	regulatory region 428532	within coordinates
Rr428533	regulatory region 428533	121 bp proximal
Tssr92593	transcription start site region 92593	318 bp downstream
Tssr92594	transcription start site region 92594	226 bp downstream
Tssr92595	transcription start site region 92595	200 bp downstream
Tssr92596	transcription start site region 92596	179 bp downstream
Tssr92597	transcription start site region 92597	237 bp upstream
Tssr96944	transcription start site region 96944	440 bp upstream