rs6385626 SNP Detail

Summary

• ID
  rs6385626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45226842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGGTGCT CACTGACCTG
  CTGGGAACCT GCCTCATCAG CCCGGTGGTG CTGGCTTCAT ATTCAAGAAA CCAGACCCTG
  GTGGCCCTGG CTCCCGAAAG TCACGCGTGT ACCTATTTCG CTTTCACTAT GACCTTCTTT
  AGTCTGGCCA CGATGCTCAT GCTCTTCGCT ATGGCCCTGG AACGCTACCT CTCCATCGGG
  Y
  ACCCTTACTT CTACAGGCGC CACTTATCGC GCCGCGGGGG TCTGGCGGTG CTGCCTGTCA
  TCTATGGGGC CTCCTTGCTC TTCTGTTCCC TGCCGCTGCT CAACTACGGG GAGTACGTCC
  AGTACTGTCC TGGGACATGG TGCTTTATCC GGCACGGGAG GACTGCATAC CTTCAGCTGT
  ACGCCACGAT GCTCCTGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8791782	WI_WGS_14_36800581	WI	MOUSE	f	SNP							T		C
ss62358675	NES17228884	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6385626					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62358675	NES17228884	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45226842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	within coordinates
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	within coordinates
Ptger2	prostaglandin E receptor 2 (subtype EP2)	within coordinates
Rr491040	regulatory region 491040	1180 bp distal
Rr491041	regulatory region 491041	459 bp proximal
Tssr4380	transcription start site region 4380	573 bp upstream
Tssr125199	transcription start site region 125199	1207 bp downstream
Tssr125200	transcription start site region 125200	1182 bp downstream
Tssr125201	transcription start site region 125201	913 bp downstream
Tssr125202	transcription start site region 125202	774 bp downstream
Tssr125203	transcription start site region 125203	713 bp downstream
Tssr125204	transcription start site region 125204	466 bp downstream
Tssr128221	transcription start site region 128221	288 bp downstream
Tssr128222	transcription start site region 128222	465 bp downstream
Tssr128223	transcription start site region 128223	517 bp downstream