rs6385628 SNP Detail

Summary

• ID
  rs6385628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115566759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACTAGGA GGTGATGCTA
  AAGAGCCAGG AGTTAGAGGG AAGAAGACAG GAGTTTGGCT TCATAGAAGG AAATTATTTA
  CAAGGGAAGT TAACTCTAAA CCTGGTGGAG AGTCAGCCCA GGTTCTTCCA AATCAAATGG
  AAGGGAGCTA GGACCCCAGA TGAAAGGGAG TCACTTGGAG GGTGCACAGC CTGGAATCTC
  Y
  GAGACACCGA CTTCTCTCTC CACTTCATTG GGGACCCTGC CAGCGGGCAA GTGTTTGGAA
  TCAGTTTCCC CCCACTCCAG ACAGTCCGAA AGGGGCTGGA AGTGAGACAG GAGGAGGTGC
  CCACAGAAGG CCGGGGAGGT GACAACTTGG GAAACCTGGC TCGAGGCTGG GCATTCTCTC
  AGCTGACCAT AGGGGTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8791784	WI_WGS_5_113398680	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6385628					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115566759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16370	CpG island 16370	320 bp proximal
Gm43231	predicted gene 43231	within coordinates
Msi1	musashi RNA-binding protein 1	975 bp upstream
Rr618242	regulatory region 618242	within coordinates
Rr618243	regulatory region 618243	794 bp proximal
Tssr48228	transcription start site region 48228	805 bp upstream
Tssr48229	transcription start site region 48229	822 bp upstream
Tssr48230	transcription start site region 48230	849 bp upstream
Tssr48231	transcription start site region 48231	885 bp upstream
Tssr48232	transcription start site region 48232	922 bp upstream
Tssr48233	transcription start site region 48233	996 bp upstream
Tssr48234	transcription start site region 48234	1020 bp upstream
Tssr48235	transcription start site region 48235	1059 bp upstream
Tssr48236	transcription start site region 48236	1244 bp upstream
Tssr48237	transcription start site region 48237	1617 bp upstream
Tssr48238	transcription start site region 48238	1880 bp upstream
Tssr52797	transcription start site region 52797	795 bp downstream