rs6386068 SNP Detail

Summary

• ID
  rs6386068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45226884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTGGTGCT GGCTTCATAT
  TCAAGAAACC AGACCCTGGT GGCCCTGGCT CCCGAAAGTC ACGCGTGTAC CTATTTCGCT
  TTCACTATGA CCTTCTTTAG TCTGGCCACG ATGCTCATGC TCTTCGCTAT GGCCCTGGAA
  CGCTACCTCT CCATCGGGTA CCCTTACTTC TACAGGCGCC ACTTATCGCG CCGCGGGGGT
  Y
  TGGCGGTGCT GCCTGTCATC TATGGGGCCT CCTTGCTCTT CTGTTCCCTG CCGCTGCTCA
  ACTACGGGGA GTACGTCCAG TACTGTCCTG GGACATGGTG CTTTATCCGG CACGGGAGGA
  CTGCATACCT TCAGCTGTAC GCCACGATGC TCCTGCTGCT TATCGTGGCT GTGCTCGCCT
  GCAACATCAG CGTTATCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8792224	WI_WGS_14_36800623	WI	MOUSE	f	SNP							C		T
ss62358672	NES17228885	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6386068					SNP	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62358672	NES17228885	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45226884 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	within coordinates
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	within coordinates
Ptger2	prostaglandin E receptor 2 (subtype EP2)	within coordinates
Rr491040	regulatory region 491040	1222 bp distal
Rr491041	regulatory region 491041	417 bp proximal
Tssr4380	transcription start site region 4380	615 bp upstream
Tssr125199	transcription start site region 125199	1249 bp downstream
Tssr125200	transcription start site region 125200	1224 bp downstream
Tssr125201	transcription start site region 125201	955 bp downstream
Tssr125202	transcription start site region 125202	816 bp downstream
Tssr125203	transcription start site region 125203	755 bp downstream
Tssr125204	transcription start site region 125204	508 bp downstream
Tssr128221	transcription start site region 128221	246 bp downstream
Tssr128222	transcription start site region 128222	423 bp downstream
Tssr128223	transcription start site region 128223	475 bp downstream