rs6386448 SNP Detail

Summary

• ID
  rs6386448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:18598857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGCGGCAA TGCTTCTTTC AACAAGGCCA CACCCTCTAA
  TAGTTCTACT TCCCATGGAC TATGCATTCA AACACATGAG TTTGTGGGGC CAAACCTATT
  Y
  AAACCCCACT CCATTTCCTG GCCCCCAAAA GCTTGTAGCC ATAACATAAT ACAAAATGCA
  TTTACTCCAA CTTCAAAGGT CCCTGTAGTC TATCACAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8792604	WI_WGS_2_18739581	WI	MOUSE	f	SNP			T	C
ss146309073	ENSMUSSNP4827130	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6386448					SNP	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18598857 () rs orientation: forward

Symbol	Name	Function Class
D2Mit464	DNA Segment, Chr 2 Massachusetts Institute of Technology 464	1664 bp proximal
Rr552329	regulatory region 552329	1493 bp distal