rs6386466 SNP Detail

Summary

• ID
  rs6386466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:18598873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGACAGC AAAAAAAAAA
  AAAAAAGAGA CTATGATCTA CACTGGGTAG GGCTTGAGCA TAGGAAACCT AAAAGCCCAA
  CCCCACAGCG GCAATGCTTC TTTCAACAAG GCCACACCCT CTAATAGTTC TACTTCCCAT
  GGACTATGCA TTCAAACACA TGAGTTTGTG GGGCCAAACC TATTTAAACC CCACTCCATT
  Y
  CCTGGCCCCC AAAAGCTTGT AGCCATAACA TAATACAAAA TGCATTTACT CCAACTTCAA
  AGGTCCCTGT AGTCTATCAC AGTCACAAGT TTTAAAAGTC CGAAGTTTAA AGTCTACAGT
  CAAAGCACTC TTGAGATCTC CAACTTCTCT TACCTTTGTT TACTGCAGCA CACTCCTTTT
  TCCTAGGCTG GTTCCACTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8792622	WI_WGS_2_18739597	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6386466					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18598873 () rs orientation: forward

Symbol	Name	Function Class
D2Mit464	DNA Segment, Chr 2 Massachusetts Institute of Technology 464	1648 bp proximal
Rr552329	regulatory region 552329	1509 bp distal