rs6386641 SNP Detail

Summary

• ID
  rs6386641
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115566909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGTTTGGA ATCAGTTTCC CCCCACTCCA GACAGTCCGA
  AAGGGGCTGG AAGTGAGACA GGAGGAGGTG CCCACAGAAG GCCGGGGAGG TGACAACTTG
  R
  GAAACCTGGC TCGAGGCTGG GCATTCTCTC AGCTGACCAT AGGGGTCCCA GGTGTGGAGA
  AAAGGGGTTT AGGGGAGTTA CAAGGCACAC TTAATTTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8792798	WI_WGS_5_113398830	WI	MOUSE	f	SNP		G	A
ss149124639	ENSMUSSNP721555	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321654893	CHEV_5_115878859	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6386641					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115566909 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16370	CpG island 16370	170 bp proximal
Gm43231	predicted gene 43231	within coordinates
Msi1	musashi RNA-binding protein 1	825 bp upstream
Rr618242	regulatory region 618242	within coordinates
Rr618243	regulatory region 618243	644 bp proximal
Tssr48228	transcription start site region 48228	655 bp upstream
Tssr48229	transcription start site region 48229	672 bp upstream
Tssr48230	transcription start site region 48230	699 bp upstream
Tssr48231	transcription start site region 48231	735 bp upstream
Tssr48232	transcription start site region 48232	772 bp upstream
Tssr48233	transcription start site region 48233	846 bp upstream
Tssr48234	transcription start site region 48234	870 bp upstream
Tssr48235	transcription start site region 48235	909 bp upstream
Tssr48236	transcription start site region 48236	1094 bp upstream
Tssr48237	transcription start site region 48237	1467 bp upstream
Tssr48238	transcription start site region 48238	1730 bp upstream
Tssr52797	transcription start site region 52797	645 bp downstream