rs6386723 SNP Detail

Summary

• ID
  rs6386723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:20188707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGCGCC GCGGGCCGCC
  GGGGTGGGGG GATGGGGGAG CTGCGCCACC AGCGGGCCGG GCTGCGAACC TGGCTCGGGG
  CCGGAGCCCG GGAGGCCTCG GCGTGCGCGT GCGCAAACCG CTCGCCGACC CTTCCCCCAC
  GGCCTCGGCT GGGACTCCTG CGCGCGCCCG GCCCAGGGCT CTGCGCACGC GTGCTTTTTT
  Y
  CCCTTTCTTC CCTGCCCATG GCAACGCCGC CGCGTGTGTT AGTTTCCGAG CCTTGCTTGT
  TGTTGGCCTT GGGGGAGGCG TCTTCCTTCC TGGTCCTAGC CTTTGGGACT CGGAGGAGAT
  AACGGCGAGC TGCGACAAAG TTAAGCAACG GAATCAGCCA CGTCGTGCGT GGCGGTTAAG
  CCGCCTCCCT CGCCTCTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8792881	WI_WGS_10_20195947	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6386723					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:20188707 () rs orientation: forward

Symbol	Name	Function Class
4933406P04Rik	RIKEN cDNA 4933406P04 gene	112 bp upstream
Bclaf1	BCL2-associated transcription factor 1	within coordinates
Cpgi1349	CpG island 1349	within coordinates
D10Csu2	DNA segment, Chr 10, Central Connecticut State University 2	791 bp distal
Gm67769	predicted gene, 67769	within coordinates
Rr428529	regulatory region 428529	1983 bp distal
Rr428530	regulatory region 428530	414 bp distal
Rr428531	regulatory region 428531	929 bp distal
Rr428532	regulatory region 428532	123 bp distal
Rr428533	regulatory region 428533	within coordinates
Tssr92593	transcription start site region 92593	561 bp downstream
Tssr92594	transcription start site region 92594	469 bp downstream
Tssr92595	transcription start site region 92595	443 bp downstream
Tssr92596	transcription start site region 92596	422 bp downstream
Tssr92597	transcription start site region 92597	within coordinates
Tssr96944	transcription start site region 96944	683 bp upstream