rs6386778 SNP Detail

Summary

• ID
  rs6386778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99092362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGAGTCT GGCTGGCCAT
  CTTTTTCCTA GCGAGGATCC TATAAGTCTA CAACTAAAAG GGAGTCCTCA CTAGAGCTCA
  ACTTTTTGCT GAGGCTTCCA GCCTCCCAAA CTGCAAGAAA TAAATGAGCT TTAAAAAAAG
  TCACCAGCCT ATAGAATTTT GTGATATAGC CTGGCCTAAG ACTAATGATA AAACTAACAG
  R
  ATTTGCCAAC GTAGTGAATG TGGTGGGGAA GAGAGAAAAG AAATTCAAGA ATGATTCCTG
  GCCACGGTGC CCACTGAATA GAACTATTTT CCCTAAGATG GACAAACTAG GGACGAGGCA
  AGTGCTATAA TTTGGGTCTA GGCTAGTCCC CAGAGGCCCC GGTCCCCAAG CTGTGTCATA
  ATGGAGACGT AACAGGAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8792936	WI_WGS_5_96474387	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6386778					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99092362 () rs orientation: forward

Symbol	Name	Function Class
Prkg2	protein kinase, cGMP-dependent, type II	within coordinates
Tssr52014	transcription start site region 52014	730 bp upstream
Tssr52015	transcription start site region 52015	698 bp upstream
Tssr52016	transcription start site region 52016	663 bp upstream
Tssr52017	transcription start site region 52017	612 bp upstream