rs6386882 SNP Detail

Summary

• ID
  rs6386882
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45868290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGTACCT GTCCTGACCT
  GCTTGTTGGA GATGTAGGGG TCTTGGTTGG GTACTAGCAA AGATAGTCTC CATCCTGTGA
  GCAGGAGAGA GGCCTTTTGT ATTTCAGGCG CCAGTCACAA CCCTTAGGCC AGGACCTCAG
  AGTTCTGGGA GCTCTGTGCA CAGCTTCTCG GGCCACCGCG CCCTCCACGG TTAGCCCCTG
  W
  GCTGCATGCA GCCTTGACAC ACTCTGCTTA GAGACAGATC CAGTGTGTCT GGAGAAGCAT
  CAGCCCCCTC CCCCCCAGCC CCCAGCAGAC ATCTTCCCTC CTTTGGAGGT GGCTGGACTG
  TGGGAAGTAT GGAAGTGGGA AAAGGAAGTG GGCAGGAGGA GGGGAGACTG AGGGAGAGAG
  GGAGGTGGCT GCAGGAATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8793041	WI_WGS_17_44577257	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6386882					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45868290 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9193	CpG island 9193	1048 bp distal
Nfkbie	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	within coordinates
Rr370254	regulatory region 370254	945 bp upstream
Rr405302	regulatory region 405302	1591 bp downstream
Rr527428	regulatory region 527428	1643 bp distal
Rr527429	regulatory region 527429	within coordinates
Tssr144787	transcription start site region 144787	1691 bp downstream
Tssr144788	transcription start site region 144788	1650 bp downstream
Tssr144789	transcription start site region 144789	1618 bp downstream
Tssr144790	transcription start site region 144790	1565 bp downstream
Tssr144791	transcription start site region 144791	1547 bp downstream
Tssr144792	transcription start site region 144792	1464 bp downstream
Tssr144793	transcription start site region 144793	1094 bp downstream