rs6386950 SNP Detail

Summary

• ID
  rs6386950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163482233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGACTAGA GCTAGAGAGA
  TGGCTTAGCA GTTAAGTGCA GTTGTTTCTC TTGCAGAGGA CTAGAGTTCA GTTTCCGGTA
  CCCAACATGG TAGCTCACTA CCAGCCTTAA CTCCAGTTCC AGGAATCCAA CCTTCTCTTC
  TGACCTCTGT AGGTACTAGG CATGCAGGTG GTGTACATAC GGAGATGTAG GCAAAACACT
  Y
  TACACATAAA ATAATCTAAA ACATTTAAAT ACAAAAAAAA AGAAGATGGT TCTAGTCTTA
  TAACATGGTC TCAGCAACCA CTTTTACAGC TTTTCCAGAC ATATCAGACT ATTTGTATTA
  GAGCAAGCTG ATTAACTTAG AAGTTCTCTC AGATGTAAAA TGAGCCTAAT GCCACTTATC
  ATCTGAACAA GGTCACTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8793109	WI_WGS_2_164572296	WI	MOUSE	f	SNP			C	T
ss148207580	ENSMUSSNP6254662	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6386950					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163482233 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr569443	regulatory region 569443			221 bp proximal
Rr569444	regulatory region 569444			314 bp proximal
Rr569445	regulatory region 569445			1256 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27319	transcription start site region 27319			971 bp upstream