rs6387010 SNP Detail

Summary

• ID
  rs6387010
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:131913554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGAGCT CCCTGCCCAC
  ACCCATTCCC CTTTCAAGCT CAGAGAAGGG CTCAAGATGT GACATTCAAA GGCCAGCTAA
  ACCAGCATTT TTTTTTTCTT GAGAGTGACC TGGTCTCTAC CTTGCTTAAT ATAACAGTGT
  TAAATAGCAC CCACAGGCCC TTTCCCTCTC TGGACAGATG AGAAGATGGT ACAGACCAGC
  Y
  TCAGGAAACA TAGCTGGAAC AAGGTGACCT CTCTCTGTGT GTCTCTCTCT CTGTCTCTCT
  CTCAATGCTT TTCTCTTTTT TCGTTGCATA TGCTAGGCAA GCCCTCTATC ACTGTACTAT
  ATTCTCGGCC AAGGCCTCAG AGTAGCCTAT ATTGGAGGGA GGATATGATG CTCTAGGCCA
  GTGGTTCTCC ACCATCCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss8793169	WI_WGS_7_122291827	WI	MOUSE	f	SNP						T		C
ss51931030	NES14953394	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T		C		T	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs6387010					SNP	T	T	T	C	T	T	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51931030	NES14953394	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:131913554 () rs orientation: forward

Symbol	Name	Function Class
Chst15	carbohydrate sulfotransferase 15	Intron
Gm44891	predicted gene 44891	31 bp downstream
Gm71837	predicted gene, 71837	within coordinates
Rr656553	regulatory region 656553	567 bp proximal
Tssr75193	transcription start site region 75193	199 bp upstream