rs6387282 SNP Detail

Summary

• ID
  rs6387282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99092461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTCCCAA ACTGCAAGAA
  ATAAATGAGC TTTAAAAAAA GTCACCAGCC TATAGAATTT TGTGATATAG CCTGGCCTAA
  GACTAATGAT AAAACTAACA GGATTTGCCA ACGTAGTGAA TGTGGTGGGG AAGAGAGAAA
  AGAAATTCAA GAATGATTCC TGGCCACGGT GCCCACTGAA TAGAACTATT TTCCCTAAGA
  Y
  GGACAAACTA GGGACGAGGC AAGTGCTATA ATTTGGGTCT AGGCTAGTCC CCAGAGGCCC
  CGGTCCCCAA GCTGTGTCAT AATGGAGACG TAACAGGAAC TTTTCGGAAT GAGGCCAGAA
  GAAAGGCCAT TGGAGAAAGG ACCTTAACTG GAATATTGAG ATGTTCGTCT CTTCCTCTTT
  GTGTTCTGGC CACCTCATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8793443	WI_WGS_5_96474486	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6387282					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99092461 () rs orientation: forward

Symbol	Name	Function Class
Prkg2	protein kinase, cGMP-dependent, type II	within coordinates
Tssr52014	transcription start site region 52014	829 bp upstream
Tssr52015	transcription start site region 52015	797 bp upstream
Tssr52016	transcription start site region 52016	762 bp upstream
Tssr52017	transcription start site region 52017	711 bp upstream