rs6387378 SNP Detail

Summary

• ID
  rs6387378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163482285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGGACT AGAGTTCAGT
  TTCCGGTACC CAACATGGTA GCTCACTACC AGCCTTAACT CCAGTTCCAG GAATCCAACC
  TTCTCTTCTG ACCTCTGTAG GTACTAGGCA TGCAGGTGGT GTACATACGG AGATGTAGGC
  AAAACACTCT ACACATAAAA TAATCTAAAA CATTTAAATA CAAAAAAAAA GAAGATGGTT
  Y
  TAGTCTTATA ACATGGTCTC AGCAACCACT TTTACAGCTT TTCCAGACAT ATCAGACTAT
  TTGTATTAGA GCAAGCTGAT TAACTTAGAA GTTCTCTCAG ATGTAAAATG AGCCTAATGC
  CACTTATCAT CTGAACAAGG TCACTGTGAA GAATGGCATG CATGTCTAGA ATATAAAGTA
  ACCAGCACAA TTCCTGACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8793540	WI_WGS_2_164572348	WI	MOUSE	f	SNP			C	T
ss148207584	ENSMUSSNP4044145	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6387378					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163482285 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr569443	regulatory region 569443			169 bp proximal
Rr569444	regulatory region 569444			262 bp proximal
Rr569445	regulatory region 569445			1204 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27319	transcription start site region 27319			1023 bp upstream