rs6387663 SNP Detail

Summary

• ID
  rs6387663
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99092475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAAATAA ATGAGCTTTA
  AAAAAAGTCA CCAGCCTATA GAATTTTGTG ATATAGCCTG GCCTAAGACT AATGATAAAA
  CTAACAGGAT TTGCCAACGT AGTGAATGTG GTGGGGAAGA GAGAAAAGAA ATTCAAGAAT
  GATTCCTGGC CACGGTGCCC ACTGAATAGA ACTATTTTCC CTAAGATGGA CAAACTAGGG
  R
  CGAGGCAAGT GCTATAATTT GGGTCTAGGC TAGTCCCCAG AGGCCCCGGT CCCCAAGCTG
  TGTCATAATG GAGACGTAAC AGGAACTTTT CGGAATGAGG CCAGAAGAAA GGCCATTGGA
  GAAAGGACCT TAACTGGAAT ATTGAGATGT TCGTCTCTTC CTCTTTGTGT TCTGGCCACC
  TCATAGTGAC AGACATCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8793827	WI_WGS_5_96474500	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6387663					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99092475 () rs orientation: forward

Symbol	Name	Function Class
Prkg2	protein kinase, cGMP-dependent, type II	within coordinates
Tssr52014	transcription start site region 52014	843 bp upstream
Tssr52015	transcription start site region 52015	811 bp upstream
Tssr52016	transcription start site region 52016	776 bp upstream
Tssr52017	transcription start site region 52017	725 bp upstream