rs6387771 SNP Detail

Summary

• ID
  rs6387771
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97963530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTTAAT TTTAGATTTT
  TGGAAATTAA GAGTATTCTC AATAAATTAC TTCATAAAAT GTAATATAAA TAATGTGTAG
  TTAAATAGTG ATATCACCAA AAGTTGAATC CCCAAGTAAA AATTTTCAGA CAGTGAGTAT
  AGTAATAGTA ATAATAATAG AAAATAACAA TAGAAAATCA AATGAACTGA GAAAGGAGAT
  R
  GGTGCTGTGT ATGTCCAAAG AGTCCTACTA TCTAATCACT TAATTTAAAA CTTGTTTTCC
  ATTATAATCT GAAGACATAT TTAAAAATGA GGATTAACTA CATCACAGAG TCTTTACCAG
  CACCAAGGCT TAGGCCAGGT ATTTGGGTTA GCTCAAAGTC AGGCAGGAGA CTCGTTTCCA
  AAATGTCTTT AAACTCTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8793935	WI_WGS_15_98974645	WI	MOUSE	f	SNP					A		G
ss51762639	NES14550149	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A		A		G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6387771					SNP	A	G	A	A	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51762639	NES14550149	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97963530 () rs orientation: forward

Symbol	Name	Function Class
Rr370004	regulatory region 370004	1959 bp upstream
Senp1	SUMO1/sentrin specific peptidase 1	within coordinates