rs6387785 SNP Detail

Summary

• ID
  rs6387785
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97963541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGATTTTT GGAAATTAAG
  AGTATTCTCA ATAAATTACT TCATAAAATG TAATATAAAT AATGTGTAGT TAAATAGTGA
  TATCACCAAA AGTTGAATCC CCAAGTAAAA ATTTTCAGAC AGTGAGTATA GTAATAGTAA
  TAATAATAGA AAATAACAAT AGAAAATCAA ATGAACTGAG AAAGGAGATA GGTGCTGTGT
  R
  TGTCCAAAGA GTCCTACTAT CTAATCACTT AATTTAAAAC TTGTTTTCCA TTATAATCTG
  AAGACATATT TAAAAATGAG GATTAACTAC ATCACAGAGT CTTTACCAGC ACCAAGGCTT
  AGGCCAGGTA TTTGGGTTAG CTCAAAGTCA GGCAGGAGAC TCGTTTCCAA AATGTCTTTA
  AACTCTGAAT TTTGAAGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8793949	WI_WGS_15_98974656	WI	MOUSE	f	SNP					A		G
ss51762636	NES14550150	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A		A		A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6387785					SNP	A	G	A	A	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51762636	NES14550150	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97963541 () rs orientation: forward

Symbol	Name	Function Class
Rr370004	regulatory region 370004	1948 bp upstream
Senp1	SUMO1/sentrin specific peptidase 1	within coordinates