rs6387887 SNP Detail

Summary

• ID
  rs6387887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163482358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         cggtacccaa
  catggtagct cactaccagc cttaactcca gttccaggaa tccaaccttc tcttctgacc
  tctgtaggta ctangcatgc aggtggtgta catacggaga tgtaggcaaa acactntaca
  cataaaataa TCTAAAACAT TTAAATACAA AAAAAAAGAA GATGGTTNTA GTCTTATAAC
  ATGGTCTCAG CAACCACTTT TACAGCTTTT CCAGACATAT CAGACTATTT GTATTAGAGC
  R
  AGCTGATTAA CTTAGAAGTT CTCTCAGATG TAAAATGAGC CTAATGCCAC TTATCATCTG
  AACAAGGTCA CTGTGAAGAA TGGCATGCAT GTCTAGAATA TAAAGTAACC AGCACAATTC
  CTGACCTACA AAGGGCTCAA TATATTGAGT AAGTATGTCC AACAGGAAGA NTGAATCTAA
  TAAGCTCTCT ATTGNCCTCT TCTGTCTTTG GTNNATTATT CCCATCCTGG GCATTATTGG
  CCTGCCAAGC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8794051	WI_WGS_2_164572421	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6387887					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163482358 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr569443	regulatory region 569443			96 bp proximal
Rr569444	regulatory region 569444			189 bp proximal
Rr569445	regulatory region 569445			1131 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27319	transcription start site region 27319			1096 bp upstream