rs6387969 SNP Detail

Summary

• ID
  rs6387969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:18599120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCCAACT TCAAAGGTCC
  CTGTAGTCTA TCACAGTCAC AAGTTTTAAA AGTCCGAAGT TTAAAGTCTA CAGTCAAAGC
  ACTCTTGAGA TCTCCAACTT CTCTTACCTT TGTTTACTGC AGCACACTCC TTTTTCCTAG
  GCTGGTTCCA CTTCCTCTTA GTGGCTTTCC TCATAGGTAT CTCACAGTTT TGGCATCTCT
  R
  ACATCTGAGG GTCTCCAAGT AGGTTCAGAG GTTCAGTCCA TTATCATCAT GGTGGGAAGC
  ATGGCAGCAC TCAGGCAGAC ATGGTGCTGG AGAGGAGCCA GGAGTTCTAC ATCTTGATCT
  TCAGGCAGCA AGGAGAGACT ATGTCCCACA CAGGGTGGAG CTTGAGCATA GGATTCCTCA
  AAGCCCACCC CCACAGTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8794133	WI_WGS_2_18739844	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6387969					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18599120 () rs orientation: forward

Symbol	Name	Function Class
D2Mit464	DNA Segment, Chr 2 Massachusetts Institute of Technology 464	1401 bp proximal
Rr552329	regulatory region 552329	1756 bp distal