rs6388318 SNP Detail

Summary

• ID
  rs6388318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185019069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CGTCATCCAC
  AGCTTCTTCA CCATCATATG CTGGGAGTTT CCCAGAATGC CTTTATTTTC AGATATCATA
  GAGCTTAAAT ACTGAGTCAA AAAAGTTTTA ATAAAATATA AAACATTCTG CCACATTGAA
  AGTAACCATA TTCAGTGTCT GTCTCTGAAG AAGTCATGAG TGTGTGTGTG TGTNTGCCCT
  Gtatatatgt atatctgcat atatatctcc atatatatat atatacatac atTATTCTTT
  Y
  TATAGTTACA AGAAATATTC TTTTAATCTT CTGATTCTTA CCCCATCTGC TACCATCTAT
  CTGCNCCTCT ACTTTCTGTG TAAGCCTTGG ATTTCTTTCT AGGGAACTGT CTAACAGCTC
  ATCTCCTCAG CCAGTCAGTA CTGTGGGGAG TGTCGTCGTC TGTTGACATC AGGTTGCTAC
  TTTGCACCAA TGACCTCTGC ACACCGAGGA CAGAGAGCGT CTGCAGTCTC AGAGGTATGC
  TTCCAACATC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8794482	WI_WGS_1_186397252	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6388318					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185019069 () rs orientation: forward

Symbol	Name	Function Class
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Rab3gap2	RAB3 GTPase activating protein subunit 2	113 bp downstream
Rr425360	regulatory region 425360	1330 bp distal