rs6388329 SNP Detail

Summary

• ID
  rs6388329
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99092649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCCTAA GATGGACAAA
  CTAGGGACGA GGCAAGTGCT ATAATTTGGG TCTAGGCTAG TCCCCAGAGG CCCCGGTCCC
  CAAGCTGTGT CATAATGGAG ACGTAACAGG AACTTTTCGG AATGAGGCCA GAAGAAAGGC
  CATTGGAGAA AGGACCTTAA CTGGAATATT GAGATGTTCG TCTCTTCCTC TTTGTGTTCT
  R
  GCCACCTCAT AGTGACAGAC ATCATTTGCC GCATGCTCTG TCATAACGTG CCATGTTCCC
  AAATCTACAG GGTCAGTGAT TCATAGACTG AAACAAGGAA CCAGAATACA TCTTTTCTTA
  CTTCTAAGTG ACCTCAGGTA TTTGGTCACA GCAATGGAAA GTCACCTGAC TCAGTGTTGC
  TGCAGCTAGT CACCGGGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8794494	WI_WGS_5_96474674	WI	MOUSE	f	SNP							G		A
ss61200717	NES16706775	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6388329					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61200717	NES16706775	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99092649 () rs orientation: forward

Symbol	Name	Function Class
Prkg2	protein kinase, cGMP-dependent, type II	within coordinates
Tssr52014	transcription start site region 52014	1017 bp upstream
Tssr52015	transcription start site region 52015	985 bp upstream
Tssr52016	transcription start site region 52016	950 bp upstream
Tssr52017	transcription start site region 52017	899 bp upstream