rs6388491 SNP Detail

Summary

• ID
  rs6388491
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163482529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACATATC AGACTATTTG
  TATTAGAGCA AGCTGATTAA CTTAGAAGTT CTCTCAGATG TAAAATGAGC CTAATGCCAC
  TTATCATCTG AACAAGGTCA CTGTGAAGAA TGGCATGCAT GTCTAGAATA TAAAGTAACC
  AGCACAATTC CTGACCTACA AAGGGCTCAA TATATTGAGT AAGTATGTCC AACAGGAAGA
  K
  TGAATCTAAT AAGCTCTCTA TTGCCCTCTT CTGTCTTTGG TGGATTATTC CCATCCTGGG
  CATTATTGGC CTGCCAAGCC CACATCTACA AGCCAAAGAA AGTAAAGATT ACCAGCAAAC
  CAACAGGGCA AAGGCACAAC GTCTCTAATC AATTGCAGAA GGTTAACAAT CCTGAGCCAC
  AGTAATGTCA GATCTGTAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8794657	WI_WGS_2_164572592	WI	MOUSE	f	SNP								G	T
ss37520864	NES08878605	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G			G	G	T	G	G	G	T	G
ss148207589	ENSMUSSNP6984381	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6388491					SNP	T	T	G	G	G	G	G	G	T	G	G	T	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520864	NES08878605	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163482529 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr569443	regulatory region 569443			within coordinates
Rr569444	regulatory region 569444			18 bp proximal
Rr569445	regulatory region 569445			960 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27319	transcription start site region 27319			1267 bp upstream