rs6388711 SNP Detail

Summary

• ID
  rs6388711
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42174359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAT GTCCAAAGCC TTGGTTCCTA
  Y
  CCCAGCATCA GATAAATAAG TAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8794877	WI_WGS_9_42480378	WI	MOUSE	f	SNP			T	C
ss46403560	mCV23263561	ABI	CRAMUS_MOUSE	f	SNP	C	C	T		C
ss136379322	ENSMUSSNP2490771	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C
ss322933975	CHEV_9_42071146	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6388711					SNP	C	C	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42174359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21617	CpG island 21617	591 bp proximal
Gm10690	predicted gene 10690	1295 bp upstream
Rr368719	regulatory region 368719	1440 bp upstream
Rr401326	regulatory region 401326	1130 bp upstream
Rr677189	regulatory region 677189	532 bp proximal
Rr677190	regulatory region 677190	1127 bp proximal
Rr677191	regulatory region 677191	1407 bp proximal
Sc5d	sterol-C5-desaturase	within coordinates
Tssr84545	transcription start site region 84545	1408 bp upstream
Tssr89017	transcription start site region 89017	922 bp upstream
Tssr89018	transcription start site region 89018	1141 bp downstream
Tssr89019	transcription start site region 89019	1163 bp downstream